I may be wrong but I think this song can relate to relaionships. Maybe a guy or a girl. Has taken advantage of their girlfriend/boyfriend (by that I mean cheating) and if they Try to imply in some way that this song is how they feel towards you than maybe they feel like you can do much Better than them.(when Chester says "dont apologize I'm loosing what I don't deserve", I think this is what he means) also when he says "at the end we were always ment to be apart like the separate chambers of the human hearts", by that I think he is stating that after all that you have been through with your other half maybe you were never ment to be together because you are different as in one good and one evil (as someone stated something about good an evil before).